nasvar

Runs the full variant-calling pipeline in your browser. No data leaves this page.

Reference bundle

T2T pediatric leukemia

CHM13v2.0 reference with the pediatric leukemia panel (SNV, CNV, fusion, ITD targets + configs). Drop your sample BAM — providing a .bai will make it a little faster.

~75 MB — loaded from server

Bring your own

Upload my own files

Supply the BAM, BAI, FASTA, FAI, GFF3, repeats / enriched / targets BEDs, MAF sites, pipeline config, and reference config yourself.

advanced

View saved result

Load a result package

Open a .nasvar.zip exported from a previous run on this or another machine — view the report without re-running the pipeline.

no compute

Drop files here (or click to pick).

Assign files to pipeline inputs

Defaults come from filename hints (repeat, enrich, target, sites, reference), but you can override any row.

output prefix (name stem):

Results